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Page 1
How to build the virtual cell with artificial intelligence: Priorities and opportunities.
Bunne C, Roohani Y, Rosen Y, Gupta A, Zhang X, Roed M, Alexandrov T, AlQuraishi M, Brennan P, Burkhardt DB, Califano A, Cool J, Dernburg AF, Ewing K, Fox EB, Haury M, Herr AE, Horvitz E, Hsu PD, Jain V, Johnson GR, Kalil T, Kelley DR, Kelley SO, Kreshuk A, Mitchison T, Otte S, Shendure J, Sofroniew NJ, Theis F, Theodoris CV, Upadhyayula S, Valer M, Wang B, Xing E, Yeung-Levy S, Zitnik M, Karaletsos T, Regev A, Lundberg E, Leskovec J, Quake SR. Bunne C, et al. Among authors: kelley dr. Cell. 2024 Dec 12;187(25):7045-7063. doi: 10.1016/j.cell.2024.11.015. Cell. 2024. PMID: 39672099 Free PMC article.
An encyclopedia of enhancer-gene regulatory interactions in the human genome.
Gschwind AR, Mualim KS, Karbalayghareh A, Sheth MU, Dey KK, Jagoda E, Nurtdinov RN, Xi W, Tan AS, Jones H, Ma XR, Yao D, Nasser J, Avsec Ž, James BT, Shamim MS, Durand NC, Rao SSP, Mahajan R, Doughty BR, Andreeva K, Ulirsch JC, Fan K, Perez EM, Nguyen TC, Kelley DR, Finucane HK, Moore JE, Weng Z, Kellis M, Bassik MC, Price AL, Beer MA, Guigó R, Stamatoyannopoulos JA, Lieberman Aiden E, Greenleaf WJ, Leslie CS, Steinmetz LM, Kundaje A, Engreitz JM. Gschwind AR, et al. Among authors: kelley dr. bioRxiv [Preprint]. 2023 Nov 13:2023.11.09.563812. doi: 10.1101/2023.11.09.563812. bioRxiv. 2023. PMID: 38014075 Free PMC article. Preprint.
Rewriting regulatory DNA to dissect and reprogram gene expression.
Martyn GE, Montgomery MT, Jones H, Guo K, Doughty BR, Linder J, Bisht D, Xia F, Cai XS, Chen Z, Cochran K, Lawrence KA, Munson G, Pampari A, Fulco CP, Sahni N, Kelley DR, Lander ES, Kundaje A, Engreitz JM. Martyn GE, et al. Among authors: kelley dr. Cell. 2025 Jun 12;188(12):3349-3366.e23. doi: 10.1016/j.cell.2025.03.034. Epub 2025 Apr 16. Cell. 2025. PMID: 40245860 Free PMC article.
How to Build the Virtual Cell with Artificial Intelligence: Priorities and Opportunities.
Bunne C, Roohani Y, Rosen Y, Gupta A, Zhang X, Roed M, Alexandrov T, AlQuraishi M, Brennan P, Burkhardt DB, Califano A, Cool J, Dernburg AF, Ewing K, Fox EB, Haury M, Herr AE, Horvitz E, Hsu PD, Jain V, Johnson GR, Kalil T, Kelley DR, Kelley SO, Kreshuk A, Mitchison T, Otte S, Shendure J, Sofroniew NJ, Theis F, Theodoris CV, Upadhyayula S, Valer M, Wang B, Xing E, Yeung-Levy S, Zitnik M, Karaletsos T, Regev A, Lundberg E, Leskovec J, Quake SR. Bunne C, et al. Among authors: kelley dr. ArXiv [Preprint]. 2024 Oct 14:arXiv:2409.11654v2. ArXiv. 2024. Update in: Cell. 2024 Dec 12;187(25):7045-7063. doi: 10.1016/j.cell.2024.11.015. PMID: 39398201 Free PMC article. Updated. Preprint.
Roles of auxin pathways in maize biology.
Cowling CL, Dash L, Kelley DR. Cowling CL, et al. Among authors: kelley dr. J Exp Bot. 2023 Dec 1;74(22):6989-6999. doi: 10.1093/jxb/erad297. J Exp Bot. 2023. PMID: 37493143 Free PMC article. Review.
Exogenous Hormone Treatments in Maize.
Guzmán-López JA, Muñoz-Javier R, Kelley DR, Abraham-Juárez MJ. Guzmán-López JA, et al. Among authors: kelley dr. Cold Spring Harb Protoc. 2026 Feb 2;2026(2):pdb.top108526. doi: 10.1101/pdb.top108526. Cold Spring Harb Protoc. 2026. PMID: 39477538
85 results