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Open Access
Transformer-DeID: Deidentification of free-text clinical notes with transformers
Callandra Moore, Lucas Bulgarelli, Tom Pollard, et al.
Fine tune transformer-based neural networks to deidentify clinical text data.
deidentification
neural networks
transformers
Published: Nov. 2, 2023.
Version: 1.0.0
Database
Credentialed Access
Annotated MIMIC-IV discharge summaries for a study on deidentification of names
Shulammite Lim, Yuxin Xiao, Alistair Johnson, et al.
Annotated MIMIC-IV discharge summaries used to explore deidentification of names
deidentification
fairness
Published: July 5, 2023.
Version: 1.0
Database
Open Access
Hillel Yaffe Glaucoma Dataset (HYGD): A Gold-Standard Annotated Fundus Dataset for Glaucoma Detection
Or Abramovich, Hadas Pizem, Jonathan Fhima, et al.
HYGD is a rigorously annotated fundus image dataset with gold-standard clinical labels designed to improve and benchmark deep learning models for accurate glaucoma detection.
ophthalmology
retina
glaucoma
dfi
gon
fundus
gold-standard
Published: March 16, 2026.
Version: 1.1.0
Database
Credentialed Access
MIMIC-IV-Note: Deidentified free-text clinical notes
Alistair Johnson, Tom Pollard, Steven Horng, et al.
Deidentified free-text clinical notes for patients in the MIMIC-IV Clinical Database.
deidentification
critical care
natural language processing
clinical notes
electronic health record
mimic
Published: Jan. 6, 2023.
Version: 2.2
Software
Open Access
edf-anonymize
edf-anonymize reads an EDF or EDF+ file (input), writing an anonymized copy of it as output.
phi
deidentification
anonymization
Published: May 17, 2010.
Version: 1.0.0
Software
Open Access
De-Identification Software Package
The deid software package includes code and dictionaries for automated location and removal of protected health information (PHI) in free text from medical records.
phi
deidentification
anonymization
Published: Dec. 18, 2007.
Version: 1.1
Maintained by the MIT Laboratory for Computational Physiology
Supported by the National Institute of Biomedical Imaging and Bioengineering (NIBIB), National Heart Lung and Blood Institute (NHLBI), and NIH Office of the Director under NIH grant numbers U24EB037545 and R01EB030362
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