AlphaFold Reveals a Key Protein Behind Heart Disease — Google DeepMind Skip to main content Explore our next generation AI systems Explore models Gemini Gemini Build intelligent agents Gemini Omni Create anything from anything Nano Banana Create and edit detailed images Gemini Audio Talk, create and control audio Specialized models Veo Generate cinematic video with audio Imagen Generate high-quality images from text Lyria Generate high fidelity music and audio World models & embodied AI Genie 3 Generate and explore interactive worlds Gemini Robotics Perceive, reason, use tools and interact Open models Gemma Build responsible AI applications at scale Our latest AI breakthroughs and updates from the lab Explore research Breakthroughs SIMA 2 An agent that plays, reasons, and learns with you Genie 3 Generate and explore interactive worlds AlphaGo Mastering the game of Go Gemini Robotics Perceive, reason, use tools and interact Learn more Evals Publications Responsibility Unlocking a new era of discovery with AI Explore science Breakthroughs AlphaFold Predict protein structures with high accuracy WeatherNext Fast and accurate AI weather forecasting AlphaEarth Map our planet in unprecedented detail AlphaEvolve Design advanced algorithms for math and applications in computing Learn more Gemini for Science Experimental Tools Science Skills Our mission is to build AI responsibly to benefit humanity About Google DeepMind Responsibility Ensuring AI safety through proactive security, even against evolving threats News Discover our latest AI breakthroughs, projects, and updates Careers We’re looking for people who want to make a real, positive impact on the world Learn more Education Our National Partnerships for AI Accelerator programs The Podcast Models Explore our next generation AI systems Explore models Gemini Gemini Build intelligent agents Gemini Omni Create anything from anything Nano Banana Create and edit detailed images Gemini Audio Talk, create and control audio Specialized models Veo Generate cinematic video with audio Imagen Generate high-quality images from text Lyria Generate high fidelity music and audio World models & embodied AI Genie 3 Generate and explore interactive worlds Gemini Robotics Perceive, reason, use tools and interact Open models Gemma Build responsible AI applications at scale Research Our latest AI breakthroughs and updates from the lab Explore research Breakthroughs SIMA 2 An agent that plays, reasons, and learns with you Genie 3 Generate and explore interactive worlds AlphaGo Mastering the game of Go Gemini Robotics Perceive, reason, use tools and interact Learn more Evals Publications Responsibility Science Unlocking a new era of discovery with AI Explore science Breakthroughs AlphaFold Predict protein structures with high accuracy WeatherNext Fast and accurate AI weather forecasting AlphaEarth Map our planet in unprecedented detail AlphaEvolve Design advanced algorithms for math and applications in computing Learn more Gemini for Science Experimental Tools Science Skills About Our mission is to build AI responsibly to benefit humanity About Google DeepMind Learn more Education Our National Partnerships for AI Accelerator programs The Podcast Responsibility Ensuring AI safety through proactive security, even against evolving threats News Discover our latest AI breakthroughs, projects, and updates Careers We’re looking for people who want to make a real, positive impact on the world Build with Gemini Try Gemini Google DeepMind Google AI Learn about all our AI Google DeepMind Explore the frontier of AI Google Labs Try our AI experiments Google Research Explore our research Products and apps Gemini app Chat with Gemini Google AI Studio Build with our next-gen AI models Google Antigravity Our agentic development platform Models Research Science About Build with Gemini Try Gemini November 25, 2025 ScienceRevealing a key protein behind heart disease Share Copied Credit: MolGraphics.com / Zachery Bernsden and Keith Cassidy In a breakthrough powered by AlphaFold, scientists have mapped the structure of the large protein that gives “bad cholesterol” its form – a discovery that could help transform how researchers and clinicians treat the world’s leading cause of death The race to reveal a key protein behind heart disease has long been both an important public health goal and a stubborn scientific problem. For assistant professors Zachary Berndsen and Keith Cassidy at the University of Missouri (Mizzou), it was also personal. Both have a family history of heart disease – a reminder of what’s at stake in their work to better understand and ultimately help treat this deadly condition. “For 50 years, people have wanted to see what this protein looked like,” says Berndsen. That protein, apoB100, has defied mapping not only because it’s enormous (for a protein), but also because it connects to fats and other molecules in complicated ways. ApoB100 forms the molecular scaffold of “bad cholesterol”, which is known to scientists as low-density lipoprotein (LDL). LDL is the major carrier of fat through the bloodstream and a key risk factor for atherosclerotic cardiovascular disease (ASCVD), the world’s leading cause of death. Discovering the structure of its key protein promised to shed light on how bad cholesterol becomes harmful inside the body, giving scientists a better chance to develop ways to prevent and treat ASCVD. AlphaFold is playing a central role in this effort. At Mizzou, biochemist Berndsen first used cryo-electron microscopy (cryo-EM) to capture images of LDL particles. The images weren’t sharp enough to map the structure of apoB100 with atomic precision, so Berndsen’s physicist collaborator, Cassidy, turned to AlphaFold. He used it to generate atomic-resolution predictions of the protein’s structure and then refined those predicted shapes by comparing them against the cryo-EM image data. Coming at the problem using both cryo-EM microscopy and Alphafold is what unlocked this breakthrough, says Cassidy: “AlphaFold played a profound role in this discovery, providing the raw material to interpret our experimental structure in a way that was frankly impossible before.” The resulting model revealed bad cholesterol’s key protein in remarkable detail: a cage-like shell that wraps around each LDL particle, including a ribbon-like belt that keeps the particle intact in the bloodstream. Knowing this structure opens new possibilities for preventing, diagnosing and treating high cholesterol and ASCVD, including therapies that could target LDL more precisely. The potential benefit to global health is hard to overstate. While such applications will take time, revealing the structure of apoB100 is a landmark achievement, and a deeply satisfying one for Berndsen. “It was the first structure I ran through AlphaFold the week it became available, and the first protein I wanted to look at with our two-storey cryo-EM machine,” he says. “Solving the structure of apoB100 was a dream come true.” Related posts AlphaFold Learn more Engineering more resilient crops for a warming climate December 2025Science Learn more Breeding healthier and stronger honeybees November 2025Science Learn more Accelerating the race against antibiotic resistance July 2022Science Learn more Stopping malaria in its tracks October 2022Science Learn more Fighting osteoporosis before it starts September 2022Science Learn more AlphaFold unlocks one of the greatest puzzles in biology July 2022Science Learn more Understanding the faulty proteins linked to cancer and autism September 2022Science Learn more Targeting early-onset Parkinson’s with AI September 2022Science Learn more Tracing the evolution of proteins back to the origin of life July 2022Science Learn more Creating plastic-eating enzymes that could save us from pollution July 2022Science Learn more AlphaFold transforms biology for millions around the world July 2022Science Learn more Solving the mystery of how an ancient bird went extinct September 2022Science Learn more The race to cure a billion people from a deadly parasitic disease July 2022Science Learn more Advancing discovery of better drugs and medicine July 2022Science Learn more Follow us Sign up for updates on our latest innovations I accept Google's Terms and Conditions and acknowledge that my information will be used in accordance with Google's Privacy Policy. 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